Reference
Full API reference for the iris library, extracted from source docstrings via mkdocstrings + Griffe.
Domain
| Module |
Description |
| Generic |
Shared bases: Metadata, AliasSet, NamedEntity, repositories |
| Genomics |
Variants, genes, annotations, filters, ports |
| Compute |
Jobs, tasks, dispatch events |
| LIMS |
Patients, samples, assays, reports |
| Human Resources |
Staff, roles, contracts |
| Operations |
Operational workflows |
| Marketing |
Referrals, campaigns |
| Sysadmin |
System configuration |
Adapters
| Module |
Description |
| Readers |
VcfReader, BedRegionReader, NirvanaReader, EmedgeneReader, ZarrVariantReader |
| Annotators |
DbNsfpAnnotator, CaddAnnotator, McpsAnnotator |
| Stores & Pipeline |
ZarrVariantStore, VariantExtractionPipeline |
| Exporters |
BedRegionExporter, TsvVariantExporter |
| Genomic analysis |
BiocpyRangeOperations, PyHpoOperations, GenotypeProcessor implementations |